PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016616
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 198aa    MW: 20707.9 Da    PI: 5.0492
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016616genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.77.2e-5823118297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqre+rktingddllwa++tlGfedyv+plkvyl+++relege+
  Lus10016616  23 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRERRKTINGDDLLWAMTTLGFEDYVDPLKVYLQRFRELEGER 118
                  89********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.9E-5221119IPR009072Histone-fold
SuperFamilySSF471134.81E-3925119IPR009072Histone-fold
PfamPF008081.4E-272892IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-195674No hitNo description
PROSITE patternPS0068505975IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-197593No hitNo description
PRINTSPR006151.1E-1994112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGDSDNDSVG HPNLSGGGLS SPREQDRFLP IANVSRIMKK ALPANAKISK DAKETVQECV  60
SEFISFITGE ASDKCQRERR KTINGDDLLW AMTTLGFEDY VDPLKVYLQR FRELEGERTA  120
GVVVGRDRDA APAGDSAGFA GAADGMGMGG YHVYGSGGGG GGFYNNNMAT TTMGHNAGGG  180
SGDPGFNGAR VDLSRCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B3e-4723113292Transcription factor HapC (Eurofung)
4g91_B3e-4723113292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523242.12e-79PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233104e-72NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0H3XRM81e-82A0A0H3XRM8_VERFO; Nuclear transcription factor Y subunit B-7
STRINGGLYMA18G08620.18e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-73nuclear factor Y, subunit B3